Protein Details: Gamma-aminobutyric acid receptor subunit delta

Protein ID

ICDB_Pro_0375

Protein Name

Gamma-aminobutyric acid receptor subunit delta

Gene Name

Gabrd

Organism

Rattus norvegicus (Rat)

Length

449 amino acids

AlphaFoldDB

AF-P18506-F1-model_v4.pdb

Function

Delta subunit of the heteropentameric ligand-gated chloride channel gated by gamma-aminobutyric acid (GABA); a major inhibitory neurotransmitter in the brain (By similarity). GABA-gated chloride channels; also named GABA(A) receptors (GABAAR); consist of five subunits arranged around a central pore and contain GABA active binding site(s) located at the alpha and beta subunit interface(s) (By similarity). When activated by GABA; GABAARs selectively allow the flow of chloride anions across the cell membrane down their electrochemical gradient (By similarity). GABAARs containing delta/GABRD subunits are predominantly expressed and located in extrasynaptic or perisynaptic positions on hippocampus and cerebellar granule cells; and contribute to the tonic GABAergic inhibition. GABAAR containing alpha-4-beta-3-delta subunits can simultaneously bind GABA and histamine where histamine binds at the interface of two neighboring beta subunits; which may be involved in the regulation of sleep and wakefulness (By similarity).

Sequence

MDVLGWLLLPLLLLCTQPHHGARAMNDIGDYVGSNLEISWLPNLDGLMEGYARNFRPGIGGPPVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLSYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMDLAKYPMDEQECMLDLESYGYSSEDIVYYWSENQEQIHGLDRLQLAQFTITSYRFTTELMNFKSAGQFPRLSLHFQLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYAFAHFNADYRKKRKAKVKVTKPRAEMDVRNAIVLFSLSAAGVSQELAISRRQGRVPGNLMGSYRSVEVEAKKEGGSRPGGPGGIRSRLKPIDADTIDIYARAVFPAAFAAVNIIYWAAYTM

PDB Structures

Ligand Binding

1. DICL_CP

2. DICL_Pep

Binding Site

Disease

Location

Found in the brain; in cerebellar granule cells (PubMed:9464994). Expressed in lungs; in alveolar epithelium (PubMed:17003036).

DOI ID

10.1016/0896-6273(89)90257-2; 10.1016/0006-291x(90)91747-g; 10.1101/gr.2596504; 10.1016/s0021-9258(17)36601-2; 10.1523/jneurosci.18-05-01693.1998; 10.1074/jbc.m606895200; 10.1038/ncomms1871

RefSeq

NP_058985.1

Feature